PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22525-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 601aa    MW: 65647.6 Da    PI: 6.5263
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22525-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.72.2e-24330389771
          E2F_TDP   7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +llt+kf++ll+++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  TRIUR3_22525-P1 330 GLLTKKFINLLKQAEDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 389
                      589*************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013725.2E-28320389IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.8E-25330391IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023198.9E-22330389IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.25E-16330390IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440741.2E-28405496No hitNo description
CDDcd146601.71E-42405496No hitNo description
PfamPF164216.5E-29405494IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MRRLPLLPLA PAALAPVVLA AILMRGLLSG RRIITQHRQL FWLSLLLNNS YAGYIQELCC  60
QLKRKATREE NNAAESSDCM IVTTGVTGNP LLTPVSGKAV KNSKSKTKNN KAGPQTPTPN  120
VDRRRWKTAA VTKHKLLESV GFTAGQGVSD NVQAAWPNRL ESLVEEELQA VVVGANGESV  180
TPQVMWSEVV NLDEEKLGAL VARDIRLITV VADVSRRRSA NSAGVRWRSA GGAGVADAGV  240
GAGAIQGAAT RVQGGCGCGA EEGARWCRSF ALAKAIPEWR SMAAEARRLG KGPQATLWLE  300
AIWVEVVGGQ DVPHGGLRAR SEVVLVWPAG LLTKKFINLL KQAEDGILDL NNAAETLEVQ  360
KRRIYDITNV LEGIGLIEKT LKNRIRWKGL DDSGVELDNG LSGLQEQALD ERISDMREKL  420
RGLTEDENSQ RWLYVTEDDI KGLPCFQNET LIAIKAPHGT TLEVPDPDEA GDYLQRRYRI  480
VLRSTLGPID VYLVSQFDDG FENLGGAATP PRHTNVPKPG PCEDLHATNA TQSSKSINVE  540
YNIQHRQNTP QDPSSSNDYG GMTRIIPSDV NTDADYWLLT EGDVSITDMW ETARILCLII  600
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-213303901374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2385900.0AJ238590.1 Triticum sp. mRNA for E2F protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755532.11e-171PREDICTED: transcription factor E2FA-like isoform X2
TrEMBLM7ZCV20.0M7ZCV2_TRIUA; Transcription factor E2FB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.15e-93E2F transcription factor 3